Biokepi API : Biokepi_pipeline_edsl.To

let mutect2 =

    somatic_vc "mutect2" 

      Tools.Gatk.Configuration.Mutect2.name

      Tools.Gatk.Configuration.Mutect2.default

      (fun

        ~configuration ~run_with

        ~normal ~tumor ~result_prefix ->

        Tools.Gatk.mutect2 ~configuration ~run_with

          ~input_normal_bam:normal

          ~input_tumor_bam:tumor

          ~result_prefix `Map_reduce)