let optitype how fq =
let fastq = get_fastq fq in
let work_dir =
Config.work_dir //
sprintf "%s-%s_optitype-%s-workdir"
fastq#product#escaped_sample_name
(match how with `RNA -> "RNA" | `DNA -> "DNA")
fastq#product#fragment_id_forced
in
Optitype_result (
Tools.Optitype.hla_type
~work_dir ~run_with ~run_name:fastq#product#escaped_sample_name ~fastq
how
:> KEDSL.unknown_product KEDSL.workflow_node
)