oddsThreshold
Arguments
ofFixedReferenceLength
ReadSubsequence
ofNextAltAllele
ReadSubsequence
onContig
LociMap
LociSet
onlyMappedReads
ReadFilterArgs
onlyPassingFilters
MultiSampleMultiAlleleEvidence
onlySomatic
Arguments
orderByEndDesc
Interval
ordering
ContigName
Position
org
root
out
Arguments
outChunks
GenotypeOutputArgs
outDir
Arguments
output
Arguments
Arguments
outputPathStr
GenotypeOutputArgs
overlaps
ReferenceRegion
overlapsLociOpt
InputFilters
overlapsLocus
ReferenceRegion