org.hammerlab.guacamole.commands

VariantLocus

case class VariantLocus(sampleId: SampleId, contigName: ContigName, locus: Locus, variantAlleleFrequency: Float) extends Product with Serializable

VariantLocus is a locus and the variant allele frequency at that locus

locus

Position of non-reference alleles

variantAlleleFrequency

Frequency of non-reference alleles

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. VariantLocus
  2. Serializable
  3. Serializable
  4. Product
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Instance Constructors

  1. new VariantLocus(sampleId: SampleId, contigName: ContigName, locus: Locus, variantAlleleFrequency: Float)

    locus

    Position of non-reference alleles

    variantAlleleFrequency

    Frequency of non-reference alleles

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. val contigName: ContigName

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  13. val locus: Locus

    Position of non-reference alleles

  14. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  15. final def notify(): Unit

    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  17. val sampleId: SampleId

  18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  19. val variantAlleleFrequency: Float

    Frequency of non-reference alleles

  20. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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