Maybe make a AllelesAndEvidenceAtSite instance given pileups for all samples at a particular site.
Maybe make a AllelesAndEvidenceAtSite instance given pileups for all samples at a particular site.
Returns None if there is no call to be made at the site (e.g. if we're not force calling the site and there is insufficient evidence for a call).
pileup instances such that pileups(i) corresponds to sample input i
sample inputs description
variant calling parameters
genome reference
return an instance for at this site even if there is insufficient evidence for a call
only return somatic calls
return calls even if they are filtered