org.hammerlab.guacamole.jointcaller.evidence

SingleSampleSingleAlleleEvidence

trait SingleSampleSingleAlleleEvidence extends AnyRef

Summary of evidence for an allele at a site in a single sample. This trait is implemented by tissue- and analyte-specific classes.

The classes implementing this should be serializable. They should gather all the per-sample information needed to call or not call a variant. They do not themselves call variants, however, as that requires looking across multiple samples.

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Abstract Value Members

  1. abstract val allele: AlleleAtLocus

    The allele under consideration

  2. abstract val annotations: Option[SingleSampleAnnotations]

    extra information, including filters, we compute about a potential call

  3. abstract def withAnnotations(annotations: SingleSampleAnnotations): SingleSampleSingleAlleleEvidence

    return a new instance including the given annotations

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  1. final def !=(arg0: AnyRef): Boolean

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