LociPartitioning

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

5. final def ==(arg0: Any): Boolean

   Definition Classes

   Any

6. final def asInstanceOf[T0]: T0

   Definition Classes

   Any

7. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

8. final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

9. def finalize(): Unit

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( classOf[java.lang.Throwable] )

10. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

11. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

12. def lociSetsRDD(sc: SparkContext): RDD[LociSet]

13. val map: LociMap[PartitionIndex]

14. final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

15. final def notify(): Unit

    Definition Classes

    AnyRef

16. final def notifyAll(): Unit

    Definition Classes

    AnyRef

17. lazy val numPartitions: Int

18. lazy val partitionContigStats: Stats[Int, Int]

19. lazy val partitionRangesStats: Stats[Int, Int]

20. lazy val partitionSets: Iterable[LociSet]

21. lazy val partitionSizeStats: Stats[NumLoci, Int]

22. lazy val rangeSizeStats: Stats[NumLoci, Int]

23. def save(os: OutputStream): Unit

    Write the wrapped map to the provided OutputStream.

    Write the wrapped map to the provided OutputStream.

    Definition Classes

    LociPartitioning → Saveable

24. def save(hc: Configuration, path: Path, overwrite: Boolean): Unit

    Definition Classes

    Saveable

25. def save(hc: Configuration, fn: String, overwrite: Boolean): Unit

    Definition Classes

    Saveable

26. def save(sc: SparkContext, path: Path, overwrite: Boolean): Unit

    Definition Classes

    Saveable

27. def save(sc: SparkContext, fn: String, overwrite: Boolean): Unit

    Definition Classes

    Saveable

28. def save(hc: Configuration, path: Path): Unit

    Definition Classes

    Saveable

29. def save(hc: Configuration, fn: String): Unit

    Definition Classes

    Saveable

30. def save(sc: SparkContext, path: Path): Unit

    Definition Classes

    Saveable

31. def save(sc: SparkContext, fn: String): Unit

    Definition Classes

    Saveable

32. def stringPieces: Iterator[String]

    Iterator over string representations of data comprising this object.

    Iterator over string representations of data comprising this object.

    Definition Classes

    LociPartitioning → TruncatedToString

33. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

34. def toString(): String

    Definition Classes

    LociPartitioning → TruncatedToString → AnyRef → Any

35. def truncatedString(maxLength: Int = 500): String

    String representation, truncated to maxLength characters.

    String representation, truncated to maxLength characters.

    Definition Classes

    TruncatedToString

36. final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

37. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

38. final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )