org.hammerlab.guacamole.loci.partitioning

UniformMicroPartitioner

case class UniformMicroPartitioner(numPartitions: NumMicroPartitions) extends UniformPartitionerBase[NumMicroPartitions] with Product with Serializable

UniformPartitionerBase implementation that computes "micro-partitions" that can be aggregated into higher-level, varyingly-sized partitions; see MicroRegionPartitioner.

Linear Supertypes
Serializable, Serializable, Product, Equals, UniformPartitionerBase[NumMicroPartitions], AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. UniformMicroPartitioner
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. UniformPartitionerBase
  7. AnyRef
  8. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new UniformMicroPartitioner(numPartitions: NumMicroPartitions)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. final def notify(): Unit

    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  15. val numPartitions: NumMicroPartitions

  16. def partitionsMap(loci: LociSet): LociMap[NumMicroPartitions]

    Assign loci to partitions.

    Assign loci to partitions. Contiguous intervals of loci will tend to get assigned to the same partition.

    Loci are assigned uniformly, i.e. each partition gets about the same number of loci.

    returns

    LociMap of locus -> partition indices.

    Definition Classes
    UniformPartitionerBase

  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  18. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from UniformPartitionerBase[NumMicroPartitions]

Inherited from AnyRef

Inherited from Any

Ungrouped