set

Type Members

1. case class Contig(name: ContigName, rangeSet: RangeSet[Long]) extends TruncatedToString with Product with Serializable

   A set of loci on a contig, stored/manipulated as loci ranges.

2. class ContigSerializer extends com.esotericsoftware.kryo.Serializer[Contig]

3. class LociIterator extends SkippableLociIterator[Locus]

4. case class LociSet(map: SortedMap[ContigName, Contig]) extends TruncatedToString with Product with Serializable

   An immutable collection of genomic regions on any number of contigs.

5. class Serializer extends com.esotericsoftware.kryo.Serializer[LociSet]

6. class TakeLociIterator extends SimpleBufferedIterator[LociSet]

   Given Positions and their corresponding Coverages, emit a sequence of LociSets such that no more than maxRegionsPerPartition regions overlap each LociSet.