org.hammerlab.guacamole.pileup

MidDeletion

case class MidDeletion(referenceBase: Byte) extends Alignment with Product with Serializable

Signifies that at a particular locus, a read has bases deleted.

Linear Supertypes
Serializable, Serializable, Product, Equals, Alignment, AnyRef, Any
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Inherited
  1. MidDeletion
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Alignment
  7. AnyRef
  8. Any
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Instance Constructors

  1. new MidDeletion(referenceBase: Byte)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. final def notify(): Unit

    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  15. val referenceBase: Byte

  16. val referenceBases: Seq[Byte]

    Definition Classes
    MidDeletion → Alignment

  17. val sequencedBases: Seq[Nothing]

    Definition Classes
    MidDeletion → Alignment

  18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  19. def toString(): String

    Definition Classes
    Alignment → AnyRef → Any

  20. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Alignment

Inherited from AnyRef

Inherited from Any

Ungrouped