Pileup

Value Members

1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. def apply(reads: Seq[MappedRead], sampleName: SampleName, contigName: ContigName, locus: Locus, contigSequence: ContigSequence): Pileup

   Given reads and a locus, returns a Pileup at the specified locus.

   Given reads and a locus, returns a Pileup at the specified locus.

   reads

   Sequence of reads, in any order, that must overlap the locus.

   contigName

   The contig these reads lie on.

   locus

   The locus to return a Pileup at.

   contigSequence

   The reference for this pileup's contig

   returns

   A Pileup at the given locus.

7. final def asInstanceOf[T0]: T0

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8. def clone(): AnyRef

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9. final def eq(arg0: AnyRef): Boolean

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10. def equals(arg0: Any): Boolean

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11. def finalize(): Unit

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12. final def getClass(): Class[_]

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13. def hashCode(): Int

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14. final def isInstanceOf[T0]: Boolean

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15. final def ne(arg0: AnyRef): Boolean

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16. final def notify(): Unit

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17. final def notifyAll(): Unit

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18. final def synchronized[T0](arg0: ⇒ T0): T0

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19. def toString(): String

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20. final def wait(): Unit

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21. final def wait(arg0: Long, arg1: Int): Unit

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22. final def wait(arg0: Long): Unit

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