iterator

Type Members

1. case class ContigCoverageIterator(halfWindowSize: Int, intervals: ContigIterator[Interval]) extends SkippableLocusKeyedIterator[Coverage] with Product with Serializable

   SkippableLociIterator that consumes Intervals (sorted by start-position) and emits a Coverage at each covered locus, indicating how many intervals overlap (and start at) that locus.

2. class ContigsIterator[T] extends SimpleBufferedIterator[(ContigName, ContigIterator[T])]

   Divide an iterator into a series of contig-restricted iterators.

3. case class RegionsNotSortedException(msg: String) extends Exception with Product with Serializable

4. case class RepeatedContigException(msg: String) extends Exception with Product with Serializable