sample the variant was called on
chromosome or genome contig of the variant
start position of the variant (0-based)
reference and sequence bases of this variant
log odds-ratio of the variant in the tumor compared to the normal sample
supporting statistics for the variant in the tumor sample
supporting statistics for the reference in the normal sample
identifier for the variant if it is in dbSNP
length of the variant
reference and sequence bases of this variant
reference and sequence bases of this variant
Conversion to ADAMVariant
Conversion to ADAMVariant
Comparisons between ranges.
Comparisons between ranges. Order is DESCENDING (i.e. reversed) from by start.
chromosome or genome contig of the variant
chromosome or genome contig of the variant
The end position on the genome, *exclusive*.
The end position on the genome, *exclusive*. Must be non-negative.
Iterate through elements in the range.
Iterate through elements in the range.
length of the variant
length of the variant
supporting statistics for the reference in the normal sample
Does the region overlap another reference region
Does the region overlap another reference region
another region on the genome
True if the the regions overlap
Does the region overlap the given locus, with halfWindowSize padding?
Does the region overlap the given locus, with halfWindowSize padding?
identifier for the variant if it is in dbSNP
identifier for the variant if it is in dbSNP
sample the variant was called on
sample the variant was called on
log odds-ratio of the variant in the tumor compared to the normal sample
start position of the variant (0-based)
start position of the variant (0-based)
supporting statistics for the variant in the tumor sample
A variant that exists in a tumor sample, but not in the normal sample; includes supporting read statistics from both samples
sample the variant was called on
chromosome or genome contig of the variant
start position of the variant (0-based)
reference and sequence bases of this variant
log odds-ratio of the variant in the tumor compared to the normal sample
supporting statistics for the variant in the tumor sample
supporting statistics for the reference in the normal sample
identifier for the variant if it is in dbSNP
length of the variant