WindowFlatMapUtils
distributed
windowFlatMapWithState
WindowFlatMapUtils
windowing
guacamole
withAnnotations
NormalDNASingleSampleSingleAlleleEvidence
SingleSampleSingleAlleleEvidence
TumorDNASingleSampleSingleAlleleEvidence
TumorRNASingleSampleSingleAlleleEvidence
withinReadDepthRange
ReadDepthFilter
SomaticReadDepthFilter
wrapped
ArrayBackedReferenceSequence
MapBackedReferenceSequence
write
ContigSerializer
Serializer
ContigSerializer
Serializer
MappedReadSerializer
UnmappedReadSerializer
AlleleSerializer
writeCalls
SomaticJoint
writeVariants
GenotypeOutputArgs
writeVcf
VCFOutput