org.hammerlab.guacamole.commands
Interface for running a command from command line arguments.
We give the variant callers and other commands control of execution. Guacamole is a toolbox of common functionality for these to use as appropriate.
If you add a new command, you should also update the commands list in Guacamole.scala to include it.
A short description of the command, for display in the usage info on the command line.
The name of the command, as it will be specified on the command line.
Run the command.
the command line arguments, with the first one chopped off. The first argument specifies which command to run, and is therefore already consumed by Guacamole.
Interface for running a command from command line arguments.
We give the variant callers and other commands control of execution. Guacamole is a toolbox of common functionality for these to use as appropriate.
If you add a new command, you should also update the commands list in Guacamole.scala to include it.