org.hammerlab.guacamole.commands.VariantSupport
A short description of the command, for display in the usage info on the command line.
The name of the command, as it will be specified on the command line.
Count alleles in a pileup
Count alleles in a pileup
Per-sample pileups of reads at a given locus.
Iterator of AlleleCount which contains pair of reference and alternate with a count.
Run the command.
Run the command.
the command line arguments, with the first one chopped off. The first argument specifies which command to run, and is therefore already consumed by Guacamole.