org.hammerlab.guacamole.filters

genotype

package genotype

Visibility
  1. Public
  2. All

Value Members

  1. object AverageBaseQualityFilter

    Filter to remove genotypes when the mean base quality of the bases is low

  2. object AverageMappingQualityFilter

    Filter to remove genotypes when the mean mapping quality of the reads is low

  3. object GenotypeFilter

  4. object MinimumAlternateReadDepthFilter

    Filter to remove genotypes where the number of reads to support the alternate allele is low

  5. object MinimumLikelihoodFilter

    Filter to remove genotypes where the likelihood is low

  6. object ReadDepthFilter

    Filter to remove genotypes where the number of reads at the locus is too low or too high

Ungrouped