Strategies for filtering reads, filtering bases within reads, and filtering the results of variant calling (called
genotypes).
For example, we might want to include only reads whose mapping quality is above a threshold, bases
whose base quality is above a threshold, and called variants that exceed a certain likelihood score.
Strategies for filtering reads, filtering bases within reads, and filtering the results of variant calling (called genotypes).
For example, we might want to include only reads whose mapping quality is above a threshold, bases whose base quality is above a threshold, and called variants that exceed a certain likelihood score.