org.hammerlab.guacamole.jointcaller.annotation

TooManyCallsAtSite

case class TooManyCallsAtSite(numCalls: Int, parameters: Parameters) extends Annotation with Product with Serializable

Filter sites where the number of calls exceeds a threshold (usually 1).

numCalls

number of calls at the site

parameters

Linear Supertypes
Serializable, Serializable, Product, Equals, Annotation, AnyRef, Any
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  1. TooManyCallsAtSite
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Annotation
  7. AnyRef
  8. Any
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Instance Constructors

  1. new TooManyCallsAtSite(numCalls: Int, parameters: Parameters)

    numCalls

    number of calls at the site

    parameters

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. def addInfoToVCF(builder: VariantContextBuilder): Unit

    update VCF with annotation fields

    update VCF with annotation fields

    Definition Classes
    Annotation

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. val isFiltered: Boolean

    is this annotation a failing filter?

    is this annotation a failing filter?

    Definition Classes
    TooManyCallsAtSite → Annotation

  13. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  14. val name: String

    Definition Classes
    TooManyCallsAtSite → Annotation

  15. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  16. final def notify(): Unit

    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  18. val numCalls: Int

    number of calls at the site

  19. val parameters: Parameters

  20. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  21. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Annotation

Inherited from AnyRef

Inherited from Any

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