annotation

Type Members

1. case class InsufficientNormal(parameters: Parameters, referenceReads: Int, totalReads: Int) extends Annotation with Product with Serializable

   Annotation and filter for insufficient normal evidence to make a somatic variant call.

2. case class MultiSampleAnnotations(insufficientNormal: Option[InsufficientNormal]) extends Product with Serializable

   Annotation for multiple samples at a single allele and a single site.

3. case class SingleSampleAnnotations(strandBias: StrandBias) extends Product with Serializable

   Extra information, such as filters, we compute about a potential call.

4. case class StrandBias(parameters: Parameters, variantForward: Int, variantReverse: Int, totalForward: Int, totalReverse: Int) extends Annotation with Product with Serializable

   Strand bias annotation and filter

5. case class TooManyCallsAtSite(numCalls: Int, parameters: Parameters) extends Annotation with Product with Serializable

   Filter sites where the number of calls exceeds a threshold (usually 1).