MultiSampleSingleAlleleEvidence

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

5. final def ==(arg0: Any): Boolean

   Definition Classes

   Any

6. def apply(parameters: Parameters, allele: AlleleAtLocus, stats: MultiplePileupStats): MultiSampleSingleAlleleEvidence

   Collect evidence for a given allele across the provided pileups and return an AlleleEvidenceAcrossSamples instance.

   Collect evidence for a given allele across the provided pileups and return an AlleleEvidenceAcrossSamples instance.

   One way to think about what we're doing here is we have a bunch of pileups, which contain reads and are therefore large and not something we want to serialize and send around, and converting them into some sufficient statistics for calling (or not calling) the variant indicated by allele. We can then send this object of statistics to the driver where it can be used to write a VCF.

7. final def asInstanceOf[T0]: T0

   Definition Classes

   Any

8. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

9. final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

10. def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

11. def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

12. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

13. def hashCode(): Int

    Definition Classes

    AnyRef → Any

14. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

15. final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

16. final def notify(): Unit

    Definition Classes

    AnyRef

17. final def notifyAll(): Unit

    Definition Classes

    AnyRef

18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

19. def toString(): String

    Definition Classes

    AnyRef → Any

20. final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

21. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

22. final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )