ParsedLoci

Value Members

1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. val all: ParsedLoci

7. def apply(ranges: Iterable[LociRange]): ParsedLoci

8. def apply(range: LociRange): ParsedLoci

9. def apply(lociStrs: Iterator[String]): ParsedLoci

10. def apply(lociStrs: String): ParsedLoci

11. final def asInstanceOf[T0]: T0

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12. def clone(): AnyRef

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13. val empty: ParsedLoci

14. final def eq(arg0: AnyRef): Boolean

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15. def equals(arg0: Any): Boolean

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16. def finalize(): Unit

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    protected[java.lang]

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17. def fromArgs(lociStrOpt: Option[String], lociFileOpt: Option[String], hadoopConfiguration: Configuration): Option[ParsedLoci]

    Parse string representations of loci ranges, either from one string (lociOpt) or a file with one range per line (lociFileOpt), and return a ParsedLoci encapsulating the result.

    Parse string representations of loci ranges, either from one string (lociOpt) or a file with one range per line (lociFileOpt), and return a ParsedLoci encapsulating the result. The latter can then be converted into a org.hammerlab.guacamole.loci.set.LociSet when contig-lengths are available / have been parsed from read-sets.

18. def fromVCF(lociFile: String): ParsedLoci

19. final def getClass(): Class[_]

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20. def hashCode(): Int

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21. final def isInstanceOf[T0]: Boolean

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22. final def ne(arg0: AnyRef): Boolean

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23. final def notify(): Unit

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24. final def notifyAll(): Unit

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25. final def synchronized[T0](arg0: ⇒ T0): T0

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26. def toString(): String

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27. final def wait(): Unit

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28. final def wait(arg0: Long, arg1: Int): Unit

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29. final def wait(arg0: Long): Unit

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