org.hammerlab.guacamole.readsets.rdd

ReadsRDD

case class ReadsRDD(reads: RDD[Read], input: Input) extends Product with Serializable

A thin wrapper around an RDD[Read], with helpers to filter to mapped and paired-mapped reads.

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Serializable, Serializable, Product, Equals, AnyRef, Any
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Instance Constructors

  1. new ReadsRDD(reads: RDD[Read], input: Input)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. val basename: String

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. val input: Input

  13. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  14. lazy val mappedPairedReads: RDD[PairedRead[MappedRead]]

  15. lazy val mappedReads: RDD[MappedRead]

  16. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  17. final def notify(): Unit

    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  19. val reads: RDD[Read]

  20. val shortName: String

  21. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  22. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
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    @throws( ... )

  24. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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