rdd

Type Members

1. class CoverageRDD[R <: ReferenceRegion] extends Serializable

   Augment an RDD[ReferenceRegion] with methods for computing coverage depth, .

2. class PartitionedRegions[R <: ReferenceRegion] extends Serializable

   Groups a LociPartitioning with an RDD[ReferenceRegion] that has already been partitioned according to that partitioning.

3. trait PartitionedRegionsArgs extends LociPartitionerArgs

   Command-line arguments related to partitioning regions according to a LociPartitioning.

4. case class ReadsRDD(reads: RDD[Read], input: Input) extends Product with Serializable

   A thin wrapper around an RDD[Read], with helpers to filter to mapped and paired-mapped reads.