Up  Next

Module Biokepi_pipeline_edsl.Pipeline_library.Input (.ml)

module Input: sig .. end
type t =
| Fastq of fastq 
type fastq = {
   sample_name : string;
   files : (string option * fastq_data)
list;
} 
type fastq_data =
| PE of string * string
| SE of string
| Of_bam of [ `PE | `SE ] * [ `Coordinate | `Read_name ] option * string * string 
val pe : ?fragment_id:'a ->
       string ->
       string -> 'a option * fastq_data
val se : ?fragment_id:'a ->
       string -> 'a option * fastq_data
val of_bam : ?fragment_id:'a ->
       ?sorted:[ `Coordinate | `Read_name ] ->
       reference_build:string ->
       [ `PE | `SE ] ->
       string -> 'a option * fastq_data
val fastq_sample : sample_name:string ->
       (string option * fastq_data)
       list -> t