G
Bases
Genotype
variants
GenotypeFilter
genotype
GenotypeFilterArguments
GenotypeFilter
GenotypeOutputArgs
variants
GenotypeOutputCaller
variants
GermlineAssemblyCaller
commands
GermlineCallerArgs
args
generateVAFHistograms
VAFHistogram
genotype
filters
germlineAlleles
MultiSampleSingleAlleleEvidence
germlineNegativeLog10HeterozygousPrior
Parameters
CommandlineArguments
germlineNegativeLog10HomozygousAlternatePrior
Parameters
CommandlineArguments
germlinePrior
MultiSampleSingleAlleleEvidence
get
Contig
getAll
Contig
LociMap
getContig
ReferenceBroadcast
ReferenceGenome
getNonReferenceAlleles
Genotype
getReadLength
CigarUtils
getReferenceBase
ReferenceBroadcast
ReferenceGenome
getReferenceLength
CigarUtils
getReferenceSequence
ReferenceBroadcast
ReferenceGenome
guacamole
hammerlab